G5I_00865 protein (Acromyrmex echinatior) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G5I_00865

Protein TAPT1-like protein. (562 aa)

Predicted Functional Partners:

G5I_01239

0.680

G5I_10002

0.641

G5I_10092

0.534

G5I_14705

0.504

G5I_07722

0.501

G5I_12031

0.418

Your Current Organism:

Acromyrmex echinatior

NCBI taxonomy Id: 103372
Other names: A. echinatior, Panamanian leafcutter ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G5I_00865	G5I_01239	F4W6N3	F4W731	Protein TAPT1-like protein.	Protein C1orf9-like protein.	0.680
G5I_00865	G5I_07722	F4W6N3	F4WPK4	Protein TAPT1-like protein.	LIRP.	0.501
G5I_00865	G5I_10002	F4W6N3	F4WVQ3	Protein TAPT1-like protein.	Zinc finger FYVE domain-containing protein 1.	0.641
G5I_00865	G5I_10092	F4W6N3	F4WW58	Protein TAPT1-like protein.	Mothers against decapentaplegic-like protein 6.	0.534
G5I_00865	G5I_12031	F4W6N3	F4X173	Protein TAPT1-like protein.	Homeobox protein MOX-2.	0.418
G5I_00865	G5I_14705	F4W6N3	F4X8G6	Protein TAPT1-like protein.	HAUS augmin-like complex subunit 3.	0.504
G5I_01239	G5I_00865	F4W731	F4W6N3	Protein C1orf9-like protein.	Protein TAPT1-like protein.	0.680
G5I_07722	G5I_00865	F4WPK4	F4W6N3	LIRP.	Protein TAPT1-like protein.	0.501
G5I_10002	G5I_00865	F4WVQ3	F4W6N3	Zinc finger FYVE domain-containing protein 1.	Protein TAPT1-like protein.	0.641
G5I_10092	G5I_00865	F4WW58	F4W6N3	Mothers against decapentaplegic-like protein 6.	Protein TAPT1-like protein.	0.534
G5I_12031	G5I_00865	F4X173	F4W6N3	Homeobox protein MOX-2.	Protein TAPT1-like protein.	0.418
G5I_14705	G5I_00865	F4X8G6	F4W6N3	HAUS augmin-like complex subunit 3.	Protein TAPT1-like protein.	0.504