STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61607.1Hypothetical protein. (418 aa)    
Predicted Functional Partners:
AFK61378.1
Hypothetical protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
   
    0.699
AFK61610.1
Histidine/lysine/arginine/ornithine ABC transporter permease HisM; COG4160 ABC-type arginine/histidine transport system, permease component.
  
  
 0.611
AFK61609.1
Polar amino acid ABC transporter permease; COG4215 ABC-type arginine transport system, permease component.
  
  
 0.610
AFK61608.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
  
  
 0.590
AFK64245.1
Hypothetical protein.
  
     0.526
AFK61606.1
COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.
       0.431
AFK64369.1
COG2175 Probable taurine catabolism dioxygenase.
  
     0.428
AFK61135.1
Polar amino acid ABC transporter inner membrane subunit; COG4160 ABC-type arginine/histidine transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.422
AFK61136.1
Histidine/lysine/arginine/ornithine ABC transporter permease HisM; COG4160 ABC-type arginine/histidine transport system, permease component.
  
  
 0.422
AFK61822.1
COG4160 ABC-type arginine/histidine transport system, permease component.
  
  
 0.422
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.