all0388 protein (Nostoc sp. PCC7120) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

all0388

Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388. (300 aa)

Predicted Functional Partners:

all0389

0.999

all0387

0.994

all2585

0.867

all2584

0.849

all0390

0.847

all0392

0.831

all0393

0.793

all0394

0.779

all2157

0.765

alr3241

0.735

Your Current Organism:

Nostoc sp. PCC7120

NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
all0387	all0388	gene:10492396	gene:10492397	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	0.994
all0387	all0389	gene:10492396	gene:10492398	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ATP-binding protein of iron(III) ABC transporter; ORF_ID:all0389.	0.998
all0387	all0390	gene:10492396	gene:10492399	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ORF_ID:all0390; hypothetical protein.	0.696
all0387	all0392	gene:10492396	gene:10492401	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ORF_ID:all0392; probable monooxygenase.	0.685
all0387	all0393	gene:10492396	gene:10492402	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ORF_ID:all0393; hypothetical protein.	0.679
all0387	all0394	gene:10492396	gene:10492403	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ORF_ID:all0394; hypothetical protein.	0.696
all0387	all2157	gene:10492396	gene:10494186	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	iron(III) dicitrate-binding periplasmic protein of ABC transporter; ORF_ID:all2157.	0.526
all0387	all2584	gene:10492396	gene:10494615	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ATP-binding protein of ferrichrome ABC transporter; ORF_ID:all2584.	0.933
all0387	alr3241	gene:10492396	gene:10495279	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ATP-binding protein of ferrichrome ABC transporter; ORF_ID:alr3241.	0.932
all0388	all0387	gene:10492397	gene:10492396	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.994
all0388	all0389	gene:10492397	gene:10492398	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ATP-binding protein of iron(III) ABC transporter; ORF_ID:all0389.	0.999
all0388	all0390	gene:10492397	gene:10492399	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ORF_ID:all0390; hypothetical protein.	0.847
all0388	all0392	gene:10492397	gene:10492401	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ORF_ID:all0392; probable monooxygenase.	0.831
all0388	all0393	gene:10492397	gene:10492402	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ORF_ID:all0393; hypothetical protein.	0.793
all0388	all0394	gene:10492397	gene:10492403	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ORF_ID:all0394; hypothetical protein.	0.779
all0388	all2157	gene:10492397	gene:10494186	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	iron(III) dicitrate-binding periplasmic protein of ABC transporter; ORF_ID:all2157.	0.765
all0388	all2584	gene:10492397	gene:10494615	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ATP-binding protein of ferrichrome ABC transporter; ORF_ID:all2584.	0.849
all0388	all2585	gene:10492397	gene:10494616	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	iron(III) dicitrate transport system permease protein; ORF_ID:all2585; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.867
all0388	alr3241	gene:10492397	gene:10495279	Periplasmic iron-compound-binding protein of iron(III) ABC transporter; ORF_ID:all0388.	ATP-binding protein of ferrichrome ABC transporter; ORF_ID:alr3241.	0.735
all0389	all0387	gene:10492398	gene:10492396	ATP-binding protein of iron(III) ABC transporter; ORF_ID:all0389.	Permease protein of iron(III) ABC transporter; ORF_ID:all0387; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.998

page 1 of 4

Server load: medium (42%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About