Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| all0135 | all2681 | gene:10492140 | gene:10494712 | ORF_ID:all0135; hypothetical protein. | ORF_ID:all2681; similar to indigoidine systhesis protein IdgB. | 0.900 |
| all0135 | alr2350 | gene:10492140 | gene:10494379 | ORF_ID:all0135; hypothetical protein. | Phosphoribulokinase; ORF_ID:alr2350. | 0.662 |
| all0135 | prk | gene:10492140 | gene:10496171 | ORF_ID:all0135; hypothetical protein. | Phosphoribulokinase; ORF_ID:alr4123. | 0.543 |
| all0135 | rbcL | gene:10492140 | gene:10493537 | ORF_ID:all0135; hypothetical protein. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.906 |
| all0135 | rbcS | gene:10492140 | gene:10493539 | ORF_ID:all0135; hypothetical protein. | Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. | 0.903 |
| all2681 | all0135 | gene:10494712 | gene:10492140 | ORF_ID:all2681; similar to indigoidine systhesis protein IdgB. | ORF_ID:all0135; hypothetical protein. | 0.900 |
| all2681 | alr2350 | gene:10494712 | gene:10494379 | ORF_ID:all2681; similar to indigoidine systhesis protein IdgB. | Phosphoribulokinase; ORF_ID:alr2350. | 0.707 |
| all2681 | prk | gene:10494712 | gene:10496171 | ORF_ID:all2681; similar to indigoidine systhesis protein IdgB. | Phosphoribulokinase; ORF_ID:alr4123. | 0.642 |
| all2681 | rbcL | gene:10494712 | gene:10493537 | ORF_ID:all2681; similar to indigoidine systhesis protein IdgB. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.906 |
| all2681 | rbcS | gene:10494712 | gene:10493539 | ORF_ID:all2681; similar to indigoidine systhesis protein IdgB. | Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. | 0.903 |
| all4131 | alr2350 | gene:10496179 | gene:10494379 | Phosphoglycerate kinase; ORF_ID:all4131. | Phosphoribulokinase; ORF_ID:alr2350. | 0.756 |
| all4131 | ccmM | gene:10496179 | gene:10492878 | Phosphoglycerate kinase; ORF_ID:all4131. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.477 |
| all4131 | prk | gene:10496179 | gene:10496171 | Phosphoglycerate kinase; ORF_ID:all4131. | Phosphoribulokinase; ORF_ID:alr4123. | 0.767 |
| all4131 | rbcL | gene:10496179 | gene:10493537 | Phosphoglycerate kinase; ORF_ID:all4131. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.924 |
| all4131 | rbcS | gene:10496179 | gene:10493539 | Phosphoglycerate kinase; ORF_ID:all4131. | Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. | 0.946 |
| all4131 | rca | gene:10496179 | gene:10493546 | Phosphoglycerate kinase; ORF_ID:all4131. | Ribulose 1,5-bisphosphate carboxylase/oxygenase activase; Activation of RuBisCO (ribulose-1,5-bisohosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure. | 0.562 |
| all5250 | alr1525 | gene:10497309 | gene:10493538 | ORF_ID:all5250; hypothetical protein. | ORF_ID:alr1525; hypothetical protein. | 0.976 |
| all5250 | ccmM | gene:10497309 | gene:10492878 | ORF_ID:all5250; hypothetical protein. | Carbon dioxide concentrating mechanism protein; ORF_ID:all0865; ccmM gene product. | 0.639 |
| all5250 | rbcL | gene:10497309 | gene:10493537 | ORF_ID:all5250; hypothetical protein. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.985 |
| all5250 | rbcS | gene:10497309 | gene:10493539 | ORF_ID:all5250; hypothetical protein. | Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. | 0.827 |
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