Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
all1731 | all4668 | gene:10493749 | gene:10496720 | ORF_ID:all1731; hypothetical protein. | Serine/threonine kinase; ORF_ID:all4668. | 0.796 |
all1731 | alr1336 | gene:10493749 | gene:10493350 | ORF_ID:all1731; hypothetical protein. | Serine/threonine kinase; ORF_ID:alr1336. | 0.748 |
all1731 | pknE | gene:10493749 | gene:10495774 | ORF_ID:all1731; hypothetical protein. | Protein serine-threonine kinase; ORF_ID:alr3732; pknE gene product. | 0.800 |
all2470 | all4668 | gene:10494501 | gene:10496720 | ORF_ID:all2470; hypothetical protein. | Serine/threonine kinase; ORF_ID:all4668. | 0.789 |
all2470 | alr1336 | gene:10494501 | gene:10493350 | ORF_ID:all2470; hypothetical protein. | Serine/threonine kinase; ORF_ID:alr1336. | 0.728 |
all2470 | pknE | gene:10494501 | gene:10495774 | ORF_ID:all2470; hypothetical protein. | Protein serine-threonine kinase; ORF_ID:alr3732; pknE gene product. | 0.788 |
all4668 | all1731 | gene:10496720 | gene:10493749 | Serine/threonine kinase; ORF_ID:all4668. | ORF_ID:all1731; hypothetical protein. | 0.796 |
all4668 | all2470 | gene:10496720 | gene:10494501 | Serine/threonine kinase; ORF_ID:all4668. | ORF_ID:all2470; hypothetical protein. | 0.789 |
all4668 | alr0547 | gene:10496720 | gene:10492558 | Serine/threonine kinase; ORF_ID:all4668. | ORF_ID:alr0547; probable protein phosphatase. | 0.803 |
all4668 | alr4516 | gene:10496720 | gene:10496565 | Serine/threonine kinase; ORF_ID:all4668. | ORF_ID:alr4516; probable protein phosphatase. | 0.804 |
all4668 | pknE | gene:10496720 | gene:10495774 | Serine/threonine kinase; ORF_ID:all4668. | Protein serine-threonine kinase; ORF_ID:alr3732; pknE gene product. | 0.530 |
alr0547 | all4668 | gene:10492558 | gene:10496720 | ORF_ID:alr0547; probable protein phosphatase. | Serine/threonine kinase; ORF_ID:all4668. | 0.803 |
alr0547 | alr1336 | gene:10492558 | gene:10493350 | ORF_ID:alr0547; probable protein phosphatase. | Serine/threonine kinase; ORF_ID:alr1336. | 0.772 |
alr0547 | pknE | gene:10492558 | gene:10495774 | ORF_ID:alr0547; probable protein phosphatase. | Protein serine-threonine kinase; ORF_ID:alr3732; pknE gene product. | 0.800 |
alr1336 | all1731 | gene:10493350 | gene:10493749 | Serine/threonine kinase; ORF_ID:alr1336. | ORF_ID:all1731; hypothetical protein. | 0.748 |
alr1336 | all2470 | gene:10493350 | gene:10494501 | Serine/threonine kinase; ORF_ID:alr1336. | ORF_ID:all2470; hypothetical protein. | 0.728 |
alr1336 | alr0547 | gene:10493350 | gene:10492558 | Serine/threonine kinase; ORF_ID:alr1336. | ORF_ID:alr0547; probable protein phosphatase. | 0.772 |
alr1336 | alr4516 | gene:10493350 | gene:10496565 | Serine/threonine kinase; ORF_ID:alr1336. | ORF_ID:alr4516; probable protein phosphatase. | 0.782 |
alr1336 | pknE | gene:10493350 | gene:10495774 | Serine/threonine kinase; ORF_ID:alr1336. | Protein serine-threonine kinase; ORF_ID:alr3732; pknE gene product. | 0.551 |
alr2242 | alr3758 | gene:10494271 | gene:10495800 | ORF_ID:alr2242; unknown protein. | ORF_ID:alr3758; probable anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.861 |
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