STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSPG4Chondroitin sulfate proteoglycan 4. (2325 aa)    
Predicted Functional Partners:
RHOV
Rho-related GTP-binding protein RhoV.
    
 
 0.814
FAT4
Protocadherin Fat 4.
      
 0.812
APOB
LOW QUALITY PROTEIN: apolipoprotein B-100.
      
 0.772
GPATCH8
G patch domain-containing protein 8 isoform X1.
      
 0.760
PTGER4
Prostaglandin E2 receptor EP4 subtype.
      
 0.746
SETX
Senataxin.
      
 0.745
CKAP5
Cytoskeleton-associated protein 5 isoform X1.
      
 0.673
ENSPVIP00000018391
annotation not available
      
 0.563
SDC3
Syndecan 3.
  
  
  0.542
PDGFRB
Platelet-derived growth factor receptor beta.
   
 
 0.511
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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