STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ53457.1UDP-glucose 4-epimerase. (312 aa)    
Predicted Functional Partners:
tuaD
UDP-glucose 6-dehydrogenase TuaD.
 
 0.954
tuaH
Putative teichuronic acid biosynthesis glycosyltransferase TuaH.
 
  
 0.927
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
 
 
 0.926
asnB_2
Asparagine synthetase 1.
 
  
 0.869
tagH_1
Teichoic acids export ATP-binding protein TagH.
 
  
 0.829
rfbB_1
dTDP-glucose 4,6-dehydratase.
 
    
0.821
AKQ53454.1
UDP-glucose 4-epimerase.
 
    
0.817
rebM
Demethylrebeccamycin-D-glucose O-methyltransferase.
 
  
 0.807
AKQ53456.1
UDP-glucose 4-epimerase.
 
    
0.795
tagG
Teichoic acid translocation permease protein TagG.
  
  
 0.771
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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