Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cphA | ftsQ | RATSFB_1122 | RATSFB_0755 | Cyanophycin synthetase. | Putative cell division protein FtsQ; Essential cell division protein. | 0.973 |
cphA | ftsW-2 | RATSFB_1122 | RATSFB_0756 | Cyanophycin synthetase. | Cell division protein FtsW; Belongs to the SEDS family. | 0.667 |
cphA | mraY | RATSFB_1122 | RATSFB_0757 | Cyanophycin synthetase. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.825 |
cphA | murC | RATSFB_1122 | RATSFB_1291 | Cyanophycin synthetase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.922 |
cphA | murD | RATSFB_1122 | RATSFB_1256 | Cyanophycin synthetase. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.973 |
cphA | murF | RATSFB_1122 | RATSFB_0758 | Cyanophycin synthetase. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.960 |
cphA | murG | RATSFB_1122 | RATSFB_0412 | Cyanophycin synthetase. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.888 |
cphA | spoVD | RATSFB_1122 | RATSFB_0760 | Cyanophycin synthetase. | Stage V sporulation protein D. | 0.931 |
cphA | uppP | RATSFB_1122 | RATSFB_1065 | Cyanophycin synthetase. | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.545 |
ftsQ | cphA | RATSFB_0755 | RATSFB_1122 | Putative cell division protein FtsQ; Essential cell division protein. | Cyanophycin synthetase. | 0.973 |
ftsQ | ftsW-2 | RATSFB_0755 | RATSFB_0756 | Putative cell division protein FtsQ; Essential cell division protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.971 |
ftsQ | mraY | RATSFB_0755 | RATSFB_0757 | Putative cell division protein FtsQ; Essential cell division protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.880 |
ftsQ | murC | RATSFB_0755 | RATSFB_1291 | Putative cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.893 |
ftsQ | murD | RATSFB_0755 | RATSFB_1256 | Putative cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.909 |
ftsQ | murE | RATSFB_0755 | RATSFB_0759 | Putative cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.796 |
ftsQ | murF | RATSFB_0755 | RATSFB_0758 | Putative cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.916 |
ftsQ | murG | RATSFB_0755 | RATSFB_0412 | Putative cell division protein FtsQ; Essential cell division protein. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.843 |
ftsQ | spoVD | RATSFB_0755 | RATSFB_0760 | Putative cell division protein FtsQ; Essential cell division protein. | Stage V sporulation protein D. | 0.955 |
ftsW-2 | cphA | RATSFB_0756 | RATSFB_1122 | Cell division protein FtsW; Belongs to the SEDS family. | Cyanophycin synthetase. | 0.667 |
ftsW-2 | ftsQ | RATSFB_0756 | RATSFB_0755 | Cell division protein FtsW; Belongs to the SEDS family. | Putative cell division protein FtsQ; Essential cell division protein. | 0.971 |
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