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PPS_4150 protein (Pseudomonas putida S16) - STRING interaction network
"PPS_4150" - ATP-dependent DNA ligase in Pseudomonas putida S16
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPS_4150ATP-dependent DNA ligase (552 aa)    
Predicted Functional Partners:
PPS_4149
Exonuclease (338 aa)
  0.997
PPS_0010
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (367 aa)
     
  0.914
PPS_4152
DEAD/DEAH box helicase domain-containing protein (817 aa)
 
          0.912
PPS_4153
Putative ICC-like protein phosphoesterase (217 aa)
 
          0.911
ligB
NAD-dependent DNA ligase LigB; Catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction (569 aa)
     
 
  0.834
ligA
NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (776 aa)
     
 
  0.834
PPS_0088
DNA polymerase I (907 aa)
   
  0.834
PPS_2715
ATP-dependent DNA ligase (830 aa)
 
 
 
  0.827
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (412 aa)
     
  0.796
PPS_4035
Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (959 aa)
     
   
  0.750
Your Current Organism:
Pseudomonas putida S16
NCBI taxonomy Id: 1042876
Other names: P. putida S16, Pseudomonas putida S16, Pseudomonas putida str. S16, Pseudomonas putida strain S16
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