STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GQS_04900COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III. (380 aa)    
Predicted Functional Partners:
GQS_03700
Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.813
GQS_04895
Hypothetical protein.
       0.773
GQS_04905
Hypothetical protein.
       0.594
rtcB
Hypothetical protein; Belongs to the RtcB family.
     
 0.544
rpl10e
COG0197 Ribosomal protein L16/L10E; Belongs to the universal ribosomal protein uL16 family.
       0.541
GQS_06380
COG2083 Uncharacterized protein conserved in archaea; Belongs to the UPF0216 family.
  
     0.450
GQS_05270
COG0417 DNA polymerase elongation subunit (family B).
 
    0.436
GQS_04915
COG0477 Permeases of the major facilitator superfamily.
       0.418
Your Current Organism:
Thermococcus sp. 4557
NCBI taxonomy Id: 1042877
Other names: T. sp. 4557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.