STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GQS_07400COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)    
Predicted Functional Partners:
GQS_05530
COG0388 Predicted amidohydrolase.
 
 
 0.953
mfnA
L-tyrosine decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 0.947
GQS_02790
COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 
0.909
GQS_08705
COG1701 Uncharacterized protein conserved in archaea.
     
  0.900
GQS_07395
Membrane protein, conserved; COG4720 Predicted membrane protein.
 
     0.691
GQS_07405
COG0492 Thioredoxin reductase.
     
 0.628
GQS_03035
COG0078 Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
 0.538
GQS_04920
Serine--glyoxylate aminotransferase, class V; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
  
 
 0.501
GQS_07415
COG1988 Predicted membrane-bound metal-dependent hydrolases.
     
 0.484
GQS_07420
ATPase; COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
       0.470
Your Current Organism:
Thermococcus sp. 4557
NCBI taxonomy Id: 1042877
Other names: T. sp. 4557
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