STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAG_04375UPF0406 protein C16orf57-like protein. (170 aa)    
Predicted Functional Partners:
EAG_04289
Pre-mRNA-processing factor 19.
    
   0.875
EAG_13272
Squamous cell carcinoma antigen recognized by T-cells 3.
    
 
 0.631
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
      
 0.630
EAG_09325
U6 snRNA-associated Sm-like protein LSm2.
      
 0.556
EAG_02428
ATP-dependent DNA helicase Q4.
      
 0.549
EAG_13768
Pleiotropic regulator 1.
    
   0.541
EAG_02948
Cell division cycle 5-related protein.
    
   0.536
EAG_01134
G patch domain-containing protein 1-like protein.
    
   0.473
EAG_10683
SNW domain-containing protein 1.
    
 
 0.438
EAG_11876
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
    
   0.407
Your Current Organism:
Camponotus floridanus
NCBI taxonomy Id: 104421
Other names: C. floridanus, Camponotus floridana, Florida carpenter ant
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