Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DSC_00145 | DSC_02090 | DSC_00145 | DSC_02090 | COG2225 Malate synthase. | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.921 |
DSC_00145 | DSC_04595 | DSC_00145 | DSC_04595 | COG2225 Malate synthase. | COG1012 NAD-dependent aldehyde dehydrogenases. | 0.815 |
DSC_00145 | DSC_08370 | DSC_00145 | DSC_08370 | COG2225 Malate synthase. | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; COG2030 Acyl dehydratase. | 0.996 |
DSC_00145 | DSC_09720 | DSC_00145 | DSC_09720 | COG2225 Malate synthase. | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.921 |
DSC_00145 | DSC_12640 | DSC_00145 | DSC_12640 | COG2225 Malate synthase. | COG0372 Citrate synthase; Belongs to the citrate synthase family. | 0.501 |
DSC_00145 | DSC_12650 | DSC_00145 | DSC_12650 | COG2225 Malate synthase. | COG0372 Citrate synthase. | 0.948 |
DSC_00145 | acsA | DSC_00145 | DSC_00690 | COG2225 Malate synthase. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.947 |
DSC_00145 | gltA | DSC_00145 | DSC_13420 | COG2225 Malate synthase. | COG0372 Citrate synthase; Belongs to the citrate synthase family. | 0.948 |
DSC_01640 | DSC_08945 | DSC_01640 | DSC_08945 | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.909 |
DSC_01640 | acsA | DSC_01640 | DSC_00690 | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.928 |
DSC_02090 | DSC_00145 | DSC_02090 | DSC_00145 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | COG2225 Malate synthase. | 0.921 |
DSC_02090 | DSC_04595 | DSC_02090 | DSC_04595 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | COG1012 NAD-dependent aldehyde dehydrogenases. | 0.905 |
DSC_02090 | DSC_08370 | DSC_02090 | DSC_08370 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; COG2030 Acyl dehydratase. | 0.967 |
DSC_02090 | DSC_09720 | DSC_02090 | DSC_09720 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.925 |
DSC_02090 | DSC_12650 | DSC_02090 | DSC_12650 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | COG0372 Citrate synthase. | 0.920 |
DSC_02090 | acsA | DSC_02090 | DSC_00690 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.929 |
DSC_02090 | gltA | DSC_02090 | DSC_13420 | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | COG0372 Citrate synthase; Belongs to the citrate synthase family. | 0.920 |
DSC_04595 | DSC_00145 | DSC_04595 | DSC_00145 | COG1012 NAD-dependent aldehyde dehydrogenases. | COG2225 Malate synthase. | 0.815 |
DSC_04595 | DSC_02090 | DSC_04595 | DSC_02090 | COG1012 NAD-dependent aldehyde dehydrogenases. | COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.905 |
DSC_04595 | DSC_08370 | DSC_04595 | DSC_08370 | COG1012 NAD-dependent aldehyde dehydrogenases. | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; COG2030 Acyl dehydratase. | 0.933 |
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