STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF54489.1Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains. (545 aa)    
Predicted Functional Partners:
SDH27271.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.615
SDF49417.1
WGR domain-containing protein, predicted DNA-binding domain in MolR.
  
    0.610
SDH44881.1
Regulatory protein, luxR family.
  
     0.576
SDG14445.1
HlyD family secretion protein.
  
     0.532
SDG85982.1
Leucine Rich Repeat.
  
     0.522
SDG07964.1
Hypothetical protein.
  
     0.512
SDG24851.1
Histidine phosphatase superfamily (branch 2).
  
     0.512
SDG11317.1
RNA ligase, DRB0094 family.
  
     0.502
SDG18911.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.491
SDF83502.1
Starch-binding associating with outer membrane.
  
     0.471
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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