STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (442 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.988
fruA
PTS system, fructose subfamily, IIC subunit.
     
 0.935
TC41_2914
Oxidoreductase domain protein.
 
 
 0.918
scrK
PfkB domain protein.
    
 0.911
ptsN
Putative PTS IIA-like nitrogen-regulatory protein PtsN.
     
 0.909
gutB
Alcohol dehydrogenase GroES domain protein.
     
 0.907
gutB-2
Alcohol dehydrogenase GroES domain protein.
     
 0.907
glk
Glucokinase, ROK family.
    
 0.834
ebgA
Glycoside hydrolase family 2 TIM barrel.
    
 0.830
TC41_2303
Aldose 1-epimerase.
  
  
 0.585
Your Current Organism:
Alicyclobacillus acidocaldarius Tc41
NCBI taxonomy Id: 1048834
Other names: A. acidocaldarius subsp. acidocaldarius Tc-4-1, Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. Tc-4-1, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain Tc-4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.