STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_00768RanBD1 domain-containing protein. (491 aa)    
Predicted Functional Partners:
VDBG_04912
Nuclear pore glycoprotein p62.
   
 0.999
VDBG_05844
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.948
VDBG_03392
Exportin-1.
    
 
 0.940
VDBG_03991
Nucleoporin NIC96.
   
 0.882
VDBG_00656
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.871
VDBG_00767
Hrq1p.
 
      0.858
VDBG_02259
Nucleoporin nup44.
   
 0.835
VDBG_04715
Uncharacterized protein.
   
 0.828
VDBG_05837
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.828
VDBG_00258
Uncharacterized protein.
   
 0.817
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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