STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000300390Uncharacterized protein. (668 aa)    
Predicted Functional Partners:
KFL_002610100
DNA-directed RNA polymerase II subunit 8; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.746
KFL_000530260
Uncharacterized protein.
    
  0.730
KFL_003190150
Non-catalytic subunit of nuclear DNA-dependent RNA polymerases.
    
  0.729
KFL_004750100
DNA-directed RNA polymerase II subunit 11.
    
  0.729
KFL_006060090
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.728
KFL_000170490
DNA-directed RNA polymerase subunit K.
    
 0.726
KFL_004850090
DNA-directed RNA polymerase II subunit 10.
    
  0.724
KFL_000610160
DNA-directed RNA polymerase II subunit 4.
    
  0.723
KFL_002560020
DNA-directed RNA polymerase II subunit 5.
    
  0.704
KFL_002560040
DNA-directed RNA polymerase subunit 5 family protein.
    
  0.704
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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