STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_001180240Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (110 aa)    
Predicted Functional Partners:
KFL_001340110
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
 0.987
KFL_000320110
SAGA-associated factor 11.
   
 0.986
KFL_001890130
Transcription initiation factor TFIID subunit.
   
 0.982
KFL_000190280
Transcription initiation factor TFIID subunit.
    
 0.981
KFL_001920160
Phosphatidylinositol 3-and 4-kinase family protein with FAT domain; Belongs to the PI3/PI4-kinase family.
    
 0.981
KFL_000440270
Histone acetyltransferase complex component.
    
 0.978
KFL_001410260
Transcription initiation factor TFIID subunit.
   
 0.976
KFL_002870160
SGF29 C-terminal domain-containing protein.
   
 0.976
KFL_000550290
Transcription initiation factor TFIID subunit.
   
 0.974
KFL_000660020
Bromo domain-containing protein.
    
 0.973
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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