STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_002740010S4 RNA-binding domain-containing protein. (280 aa)    
Predicted Functional Partners:
KFL_005450090
Peptidyl-tRNA hydrolase.
    
 
 0.633
KFL_001360250
Pentatricopeptide repeat domain containing protein.
    
   0.622
KFL_004950030
Uncharacterized protein.
   
   0.613
KFL_001130250
Uncharacterized protein.
    
 
 0.602
KFL_003310010
Mitochondrial ribosomal protein L23.
   
   0.595
KFL_008700030
Mitochondrial or chloroplast ribosomal protein L34.
    
   0.588
KFL_000860080
Chloroplast ribosomal protein L24.
    
   0.586
KFL_001820240
L51_S25_CI-B8 domain-containing protein.
    
   0.586
KFL_003990080
Mitochondrial ribosomal protein L29.
    
   0.586
KFL_005290040
SIGNAL RECOGNITION PARTICLE 72.
    
   0.586
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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