STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_002580160Putative traf-type zinc finger family protein. (893 aa)    
Predicted Functional Partners:
KFL_000210330
Ubiquitin-conjugating enzyme family protein.
    
 0.852
KFL_001260140
Ubiquitin conjugating enzyme family protein.
    
 0.852
KFL_002090040
Ubiquitin-conjugating enzyme E2-like protein.
    
 0.852
KFL_001440120
Ubiquitin/40S ribosomal protein S27a fusion.
    
 0.817
KFL_003450130
60S ribosomal protein L40.
    
  0.805
KFL_001280050
Ubiquitin-conjugating enzyme E2 N.
    
 0.694
KFL_000690290
Ubiquitin-conjugating enzyme E2.
    
 0.672
KFL_005020040
WD_REPEATS_REGION domain-containing protein.
   
 0.664
KFL_000830080
Zinc finger ZZ-type domain containing protein.
    
 0.659
KFL_001420010
Zinc finger ZZ-type domain containing protein.
    
 0.659
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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