STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_004400030bVLRF1 domain-containing protein. (190 aa)    
Predicted Functional Partners:
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
   0.704
KFL_003310040
Ubiquitin conjugation factor E4 B.
    
 
 0.604
KFL_010330020
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.587
KFL_000060400
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
   0.576
KFL_000320090
60S ribosomal protein L27A; Belongs to the universal ribosomal protein uL15 family.
    
   0.576
KFL_001090130
60S ribosomal protein L32.
    
   0.576
KFL_003600040
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
    
   0.576
KFL_004330040
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
   0.576
KFL_004650030
60S ribosomal protein L5.
    
   0.576
KFL_008650050
60S ribosomal protein L10 family protein.
    
   0.576
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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