STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_004540110Universal stress protein family protein. (170 aa)    
Predicted Functional Partners:
KFL_002090180
Superkiller protein 3.
    
 0.784
KFL_002730150
RNA polymerase II assessory factor Cdc73p.
    
 0.748
KFL_001260180
Leo1-like protein.
    
 0.741
KFL_002290070
Paf1 domain containing protein.
   
 0.740
KFL_000240010
RNA helicase ATP-dependent SK12/DOB1 protein.
    
 0.723
KFL_000560110
DEAD-like helicases superfamily.
    
 0.723
KFL_000250370
RNA polymerase-associated protein CTR9 homolog.
    
 0.698
KFL_000250400
Uncharacterized protein.
    
 0.698
KFL_000290120
Cullin 4; Belongs to the cullin family.
    
  0.671
KFL_000320350
DNA damage-binding protein 1.
    
  0.660
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.