STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_005070080PHD-type domain-containing protein. (2472 aa)    
Predicted Functional Partners:
KFL_001300130
Replication factor C subunit RFC3.
   
 0.903
KFL_000220250
Replication factor C subunit RFC4.
   
 0.888
KFL_003730140
Replication factor C subunit RFC2.
   
 0.887
KFL_003550040
Replication factor C subunit RFC5.
   
 0.886
KFL_000490340
Putative Y-family DNA polymerase.
   
 0.850
KFL_003810040
Helicase conserved C-terminal domain containing protein.
   
 0.833
KFL_000860170
Checkpoint RAD17-RFC complex RAD17/RAD24 component.
   
 0.826
KFL_004220150
DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.
   
 0.799
KFL_006980030
DNA ligase.
   
 0.777
KFL_000610170
Putative DNA repair protein XPGC.
   
 0.771
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.