STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW97395.1Predicted arabinose efflux permease, MFS family. (440 aa)    
Predicted Functional Partners:
SDW23253.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
    
 0.705
SDX04617.1
Ribulose-bisphosphate carboxylase large chain.
  
     0.676
SDW09400.1
Chorismate mutase.
   
 
 0.619
SDW06970.1
Protein-S-isoprenylcysteine O-methyltransferase Ste14.
  
     0.594
SDW77096.1
Protoporphyrinogen oxidase.
 
  
  0.558
SDW25148.1
Serine aminopeptidase, S33.
  
  
  0.548
SDX21120.1
HlyD family secretion protein.
  
 0.536
SDW88351.1
Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase.
    
 0.526
SDX48201.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
  0.515
SDW97377.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.508
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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