STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX21120.1HlyD family secretion protein. (410 aa)    
Predicted Functional Partners:
SDX21143.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.964
SDX14506.1
Outer membrane efflux protein.
  
 0.946
SDW68722.1
Outer membrane protein.
 
 0.910
SDX32851.1
Outer membrane protein TolC; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 0.831
SDX18032.1
Putative ABC transport system permease protein.
  
 
 0.772
SDX51316.1
Outer membrane efflux protein.
   
  0.647
SDX21102.1
Hypothetical protein.
       0.581
SDW48750.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
   
 0.546
SDW23800.1
Major Facilitator Superfamily protein.
  
  0.541
SDW97395.1
Predicted arabinose efflux permease, MFS family.
  
 0.536
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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