STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureBUrease, beta subunit; Belongs to the urease beta subunit family. (126 aa)    
Predicted Functional Partners:
ureC
Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 0.999
ureA
Urease, gamma subunit; Belongs to the urease gamma subunit family.
 0.999
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
  
 0.947
ureD
Putative urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.933
ABD10215.1
Putative urease accessory protein.
 
 
 0.928
ABD10461.1
Hydrogenase accessory protein HypB.
  
  
 0.579
ABD11313.1
Hydrogenase accessory protein HypB.
  
  
 0.579
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.