STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD10681.1Glycosyl transferase, group 1. (441 aa)    
Predicted Functional Partners:
ABD10677.1
Heparinase II/III-like.
 
     0.890
ABD10685.1
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.836
ABD10683.1
Oxidoreductase-like.
 
  
 0.801
ABD10680.1
Methyltransferase FkbM.
  
    0.794
ABD10678.1
Glycosyl transferase, family 2.
  
  
 0.788
ABD10686.1
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.778
ABD10679.1
Hypothetical protein.
       0.773
ABD10666.1
Oxidoreductase-like.
 
  
 0.581
ABD12826.1
Polysaccharide biosynthesis protein CapD.
 
    0.580
ABD10675.1
Glycosyltransferases-like.
  
    0.565
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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