STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD11959.1Putative PAS/PAC sensor protein. (594 aa)    
Predicted Functional Partners:
ABD13399.1
GAF sensor hybrid histidine kinase.
 
 
 0.992
ABD10162.1
Putative PAS/PAC sensor protein.
  
 
 0.977
ABD09755.1
Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor.
  
 
 0.949
ABD11889.1
Diguanylate cyclase (GGDEF domain).
 
 
 0.941
ABD11524.1
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.909
ABD13037.1
Histidine kinase.
 
 
 0.893
ABD13648.1
Anti-sigma-factor antagonist (STAS) domain protein.
 
 
 0.887
ABD12868.1
Diguanylate phosphodiesterase (EAL domain).
  
 
 0.874
ABD11511.1
Diguanylate phosphodiesterase (EAL domain) with GAF sensor.
  
 
 0.872
ABD11788.1
Diguanylate phosphodiesterase (EAL domain) with GAF sensor.
  
 
 0.872
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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