STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD13139.1ABC-1. (574 aa)    
Predicted Functional Partners:
ABD09846.1
Transcriptional regulator, XRE family.
  
     0.749
ABD12452.1
Cyclase/dehydrase.
  
 
 
 0.745
ABD13625.1
Arsenite efflux ATP-binding protein ArsA; TC 3.A.4.1.1.
  
     0.653
ABD09866.1
Phospholipid/glycerol acyltransferase.
  
     0.632
ABD13138.1
UBA/THIF-type NAD/FAD binding fold.
       0.629
ABD10009.1
Alpha/beta hydrolase fold.
  
  
 0.624
ABD13626.1
Arsenite efflux ATP-binding protein ArsA; TC 3.A.4.1.1.
  
     0.583
ABD09865.1
NAD-dependent epimerase/dehydratase.
 
    0.501
ABD13137.1
Conserved hypothetical protein.
       0.491
ABD13885.1
Conserved hypothetical protein.
  
     0.462
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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