STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD13549.1ABC transporter related. (305 aa)    
Predicted Functional Partners:
ABD13550.1
ABC-2.
 
   
 0.897
ABD13548.1
Hypothetical protein.
  
    0.775
ABD13546.1
Protein of unknown function DUF181.
  
    0.756
ABD13543.1
Hypothetical protein.
  
    0.753
ABD13544.1
Hypothetical protein.
       0.752
ABD13545.1
Hypothetical protein.
       0.752
ABD13547.1
Hypothetical protein.
       0.752
ABD11395.1
ABC-2.
  
 0.518
ABD09630.1
ABC transporter related.
 
    
0.488
ABD10850.1
ABC-2.
  
 0.486
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.