STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD13556.1Two component transcriptional regulator, LuxR family. (201 aa)    
Predicted Functional Partners:
ABD09479.1
Putative signal transduction histidine kinase.
 
 
 0.847
ABD10162.1
Putative PAS/PAC sensor protein.
  
 
 0.775
ABD12129.1
Two component transcriptional regulator, LuxR family.
  
     0.774
ABD09478.1
Two component transcriptional regulator, LuxR family.
  
     0.773
ABD11056.1
Two component transcriptional regulator, LuxR family.
  
     0.771
ABD10862.1
Putative signal transduction histidine kinase.
 
 
 0.718
ABD10919.1
Transcriptional regulator, LuxR family.
  
     0.699
ABD10936.1
Putative signal transduction histidine kinase.
 
 
 0.661
ABD12608.1
Putative signal transduction histidine kinase.
 
 
 0.618
ABD11524.1
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.614
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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