STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVD_03320DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
TVD_03315
Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.807
TVD_03325
Na/Pi-cotransporter II-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
TVD_03330
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
TVD_05865
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
TVD_00295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.573
TVD_03335
PEBP family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
TVD_00260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
TVD_00315
Exosortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
TVD_03340
Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.431
TVD_00275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.406
Your Current Organism:
Thioalkalivibrio versutus
NCBI taxonomy Id: 106634
Other names: CBS 100464, DSM 13738, T. versutus, Thialkalivibrio versutus, Thioalkalivibrio versutus Sorokin et al. 2001, strain AL 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.