STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCABP00000001151annotation not available (86 aa)    
Predicted Functional Partners:
TMCO1
Transmembrane and coiled-coil domains 1.
   
   0.758
TMEM147
Transmembrane protein 147.
   
   0.688
WDR83OS
WD repeat domain 83 opposite strand.
   
   0.673
SEC61G
SEC61 translocon gamma subunit.
   
   0.669
NCLN
Nicalin.
   
   0.668
CCDC47
Coiled-coil domain containing 47.
    
   0.658
RPL10
Ribosomal protein L10.
   
   0.657
RPL8
Ribosomal protein L8.
   
   0.650
RPL19
Ribosomal protein L19.
   
   0.650
ENSCABP00000009321
annotation not available
   
   0.646
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.