PNEG_03186 protein (Pneumocystis murina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PNEG_03186

MADS-box domain-containing protein. (343 aa)

Predicted Functional Partners:

PNEG_01899

0.975

PNEG_03239

0.953

PNEG_01242

0.941

PNEG_00623

0.866

PNEG_00380

0.857

PNEG_01418

0.748

PNEG_00576

0.718

PNEG_02579

0.713

PNEG_02291

0.672

PNEG_01785

0.672

Your Current Organism:

Pneumocystis murina

NCBI taxonomy Id: 1069680
Other names: P. murina B123, Pneumocystis murina B123

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNEG_00380	PNEG_00623	M7NW50	M7PKN8	Serine/threonine-protein kinase.	Fork-head domain-containing protein.	0.807
PNEG_00380	PNEG_01242	M7NW50	M7PJA0	Serine/threonine-protein kinase.	Uncharacterized protein.	0.760
PNEG_00380	PNEG_01418	M7NW50	M7NN78	Serine/threonine-protein kinase.	GTP-binding protein rhoA.	0.650
PNEG_00380	PNEG_01785	M7NW50	M7NSD3	Serine/threonine-protein kinase.	Cell division control protein 42.	0.676
PNEG_00380	PNEG_02291	M7NW50	M7NQG9	Serine/threonine-protein kinase.	Uncharacterized protein.	0.655
PNEG_00380	PNEG_02579	M7NW50	M7P5W4	Serine/threonine-protein kinase.	Uncharacterized protein.	0.491
PNEG_00380	PNEG_03186	M7NW50	M7NMK0	Serine/threonine-protein kinase.	MADS-box domain-containing protein.	0.857
PNEG_00576	PNEG_00623	M7NQH5	M7PKN8	MADS-box domain-containing protein.	Fork-head domain-containing protein.	0.515
PNEG_00576	PNEG_01242	M7NQH5	M7PJA0	MADS-box domain-containing protein.	Uncharacterized protein.	0.718
PNEG_00576	PNEG_03186	M7NQH5	M7NMK0	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.718
PNEG_00623	PNEG_00380	M7PKN8	M7NW50	Fork-head domain-containing protein.	Serine/threonine-protein kinase.	0.807
PNEG_00623	PNEG_00576	M7PKN8	M7NQH5	Fork-head domain-containing protein.	MADS-box domain-containing protein.	0.515
PNEG_00623	PNEG_01242	M7PKN8	M7PJA0	Fork-head domain-containing protein.	Uncharacterized protein.	0.762
PNEG_00623	PNEG_01899	M7PKN8	M7NR31	Fork-head domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.471
PNEG_00623	PNEG_03186	M7PKN8	M7NMK0	Fork-head domain-containing protein.	MADS-box domain-containing protein.	0.866
PNEG_00623	PNEG_03239	M7PKN8	M7NMF9	Fork-head domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.471
PNEG_01242	PNEG_00380	M7PJA0	M7NW50	Uncharacterized protein.	Serine/threonine-protein kinase.	0.760
PNEG_01242	PNEG_00576	M7PJA0	M7NQH5	Uncharacterized protein.	MADS-box domain-containing protein.	0.718
PNEG_01242	PNEG_00623	M7PJA0	M7PKN8	Uncharacterized protein.	Fork-head domain-containing protein.	0.762
PNEG_01242	PNEG_01899	M7PJA0	M7NR31	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.496