STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF60941.1Predicted dehydrogenase. (304 aa)    
Predicted Functional Partners:
SHG39090.1
Myo-inositol-1(or 4)-monophosphatase.
    
 0.906
SHG29922.1
Threonine dehydrogenase.
 
 
  0.885
SHG17543.1
Inosose dehydratase.
 
 
  0.849
SHG17600.1
Inosose dehydratase.
 
 
  0.848
SHG17512.1
Sugar phosphate isomerase/epimerase.
 
 
  0.832
SHG17569.1
Sugar phosphate isomerase/epimerase.
 
 
  0.829
SHF79295.1
Predicted dehydrogenase.
  
     0.687
SHF74114.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.673
SHF76868.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.668
SHF74049.1
Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.660
Your Current Organism:
Geodermatophilus nigrescens
NCBI taxonomy Id: 1070870
Other names: CCTCC AA 2011015, DSM 45408, G. nigrescens, Geodermatophilus nigrescens Nie et al. 2012 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. YIM 75980, JCM 18056, YIM 75980
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