Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEU09463.1 | argS | BLBCPU_422 | BLBCPU_424 | COG0022C; COG1071C. | arginine-tRNA ligase; COG0018J. | 0.556 |
AEU09463.1 | ffh | BLBCPU_422 | BLBCPU_425 | COG0022C; COG1071C. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.657 |
AEU09463.1 | glpD | BLBCPU_422 | BLBCPU_426 | COG0022C; COG1071C. | Glycerol-3-phosphate dehydrogenase; COG0578C. | 0.560 |
AEU09463.1 | ilvE | BLBCPU_422 | BLBCPU_423 | COG0022C; COG1071C. | Branched-chain amino acid transaminase; COG0115EH. | 0.780 |
AEU09463.1 | sdhB | BLBCPU_422 | BLBCPU_143 | COG0022C; COG1071C. | Succinate dehydrogenase iron-sulfur subunit; COG0479C. | 0.561 |
argS | AEU09463.1 | BLBCPU_424 | BLBCPU_422 | arginine-tRNA ligase; COG0018J. | COG0022C; COG1071C. | 0.556 |
argS | ffh | BLBCPU_424 | BLBCPU_425 | arginine-tRNA ligase; COG0018J. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.801 |
argS | glpD | BLBCPU_424 | BLBCPU_426 | arginine-tRNA ligase; COG0018J. | Glycerol-3-phosphate dehydrogenase; COG0578C. | 0.508 |
argS | glpF | BLBCPU_424 | BLBCPU_428 | arginine-tRNA ligase; COG0018J. | Putative glycerol diffusion channel; COG0580G; predicted membrane protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. | 0.407 |
argS | glpK | BLBCPU_424 | BLBCPU_427 | arginine-tRNA ligase; COG0018J. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.404 |
argS | ilvE | BLBCPU_424 | BLBCPU_423 | arginine-tRNA ligase; COG0018J. | Branched-chain amino acid transaminase; COG0115EH. | 0.781 |
argS | thrS | BLBCPU_424 | BLBCPU_429 | arginine-tRNA ligase; COG0018J. | threonine--tRNA ligase; COG0441J. | 0.625 |
ffh | AEU09463.1 | BLBCPU_425 | BLBCPU_422 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | COG0022C; COG1071C. | 0.657 |
ffh | argS | BLBCPU_425 | BLBCPU_424 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | arginine-tRNA ligase; COG0018J. | 0.801 |
ffh | glpD | BLBCPU_425 | BLBCPU_426 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Glycerol-3-phosphate dehydrogenase; COG0578C. | 0.485 |
ffh | glpK | BLBCPU_425 | BLBCPU_427 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.458 |
ffh | ilvE | BLBCPU_425 | BLBCPU_423 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Branched-chain amino acid transaminase; COG0115EH. | 0.750 |
glpD | AEU09463.1 | BLBCPU_426 | BLBCPU_422 | Glycerol-3-phosphate dehydrogenase; COG0578C. | COG0022C; COG1071C. | 0.560 |
glpD | argS | BLBCPU_426 | BLBCPU_424 | Glycerol-3-phosphate dehydrogenase; COG0578C. | arginine-tRNA ligase; COG0018J. | 0.508 |
glpD | ffh | BLBCPU_426 | BLBCPU_425 | Glycerol-3-phosphate dehydrogenase; COG0578C. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.485 |
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