Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dnaB | gshB | BUAP5A_539 | BUAP5A_540 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. | Glutathione synthase. | 0.429 |
dnaB | yqgF | BUAP5A_539 | BUAP5A_541 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. | Predicted Holliday junction resolvase (YqgF); Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.446 |
gshA | gshB | BUAP5A_400 | BUAP5A_540 | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | Glutathione synthase. | 0.959 |
gshA | pepA | BUAP5A_400 | BUAP5A_360 | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides (By similarity). | 0.900 |
gshA | trxB | BUAP5A_400 | BUAP5A_307 | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | Thioredoxin reductase. | 0.469 |
gshB | dnaB | BUAP5A_540 | BUAP5A_539 | Glutathione synthase. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. | 0.429 |
gshB | gshA | BUAP5A_540 | BUAP5A_400 | Glutathione synthase. | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | 0.959 |
gshB | lpdA | BUAP5A_540 | BUAP5A_204 | Glutathione synthase. | Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase is a component of the alpha-ketoacid dehydrogenase complexes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.461 |
gshB | pepA | BUAP5A_540 | BUAP5A_360 | Glutathione synthase. | Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides (By similarity). | 0.948 |
gshB | rpsF | BUAP5A_540 | BUAP5A_557 | Glutathione synthase. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.461 |
gshB | sodA | BUAP5A_540 | BUAP5A_186 | Glutathione synthase. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.461 |
gshB | trxB | BUAP5A_540 | BUAP5A_307 | Glutathione synthase. | Thioredoxin reductase. | 0.461 |
gshB | yggS | BUAP5A_540 | BUAP5A_542 | Glutathione synthase. | Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.569 |
gshB | yggW | BUAP5A_540 | BUAP5A_543 | Glutathione synthase. | Predicted oxidoreductase (YggW); Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine (By similarity). | 0.492 |
gshB | yqgF | BUAP5A_540 | BUAP5A_541 | Glutathione synthase. | Predicted Holliday junction resolvase (YqgF); Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.788 |
lpdA | gshB | BUAP5A_204 | BUAP5A_540 | Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase is a component of the alpha-ketoacid dehydrogenase complexes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Glutathione synthase. | 0.461 |
lpdA | sodA | BUAP5A_204 | BUAP5A_186 | Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase is a component of the alpha-ketoacid dehydrogenase complexes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.497 |
lpdA | trxB | BUAP5A_204 | BUAP5A_307 | Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase is a component of the alpha-ketoacid dehydrogenase complexes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Thioredoxin reductase. | 0.642 |
pepA | gshA | BUAP5A_360 | BUAP5A_400 | Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides (By similarity). | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | 0.900 |
pepA | gshB | BUAP5A_360 | BUAP5A_540 | Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides (By similarity). | Glutathione synthase. | 0.948 |
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