Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKY_1736 | KKY_2658 | KKY_1736 | KKY_2658 | DNA topoisomerase IB (poxvirus type). | Hypothetical protein. | 0.432 |
KKY_1736 | KKY_3147 | KKY_1736 | KKY_3147 | DNA topoisomerase IB (poxvirus type). | mRNA 3-end processing factor. | 0.402 |
KKY_1736 | KKY_3148 | KKY_1736 | KKY_3148 | DNA topoisomerase IB (poxvirus type). | ATP-dependent DNA ligase LigC. | 0.534 |
KKY_1736 | ku | KKY_1736 | KKY_1734 | DNA topoisomerase IB (poxvirus type). | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.651 |
KKY_1736 | polA | KKY_1736 | KKY_3719 | DNA topoisomerase IB (poxvirus type). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.500 |
KKY_2658 | KKY_1736 | KKY_2658 | KKY_1736 | Hypothetical protein. | DNA topoisomerase IB (poxvirus type). | 0.432 |
KKY_2658 | KKY_3144 | KKY_2658 | KKY_3144 | Hypothetical protein. | DNA polymerase-like protein. | 0.922 |
KKY_2658 | KKY_3148 | KKY_2658 | KKY_3148 | Hypothetical protein. | ATP-dependent DNA ligase LigC. | 0.616 |
KKY_2658 | KKY_3419 | KKY_2658 | KKY_3419 | Hypothetical protein. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.992 |
KKY_2658 | polA | KKY_2658 | KKY_3719 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.990 |
KKY_3144 | KKY_2658 | KKY_3144 | KKY_2658 | DNA polymerase-like protein. | Hypothetical protein. | 0.922 |
KKY_3144 | KKY_3148 | KKY_3144 | KKY_3148 | DNA polymerase-like protein. | ATP-dependent DNA ligase LigC. | 0.538 |
KKY_3144 | KKY_3419 | KKY_3144 | KKY_3419 | DNA polymerase-like protein. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.950 |
KKY_3144 | KKY_375 | KKY_3144 | KKY_375 | DNA polymerase-like protein. | Helicase domain protein. | 0.419 |
KKY_3144 | KKY_376 | KKY_3144 | KKY_376 | DNA polymerase-like protein. | Hypothetical protein. | 0.424 |
KKY_3144 | polA | KKY_3144 | KKY_3719 | DNA polymerase-like protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.730 |
KKY_3147 | KKY_1736 | KKY_3147 | KKY_1736 | mRNA 3-end processing factor. | DNA topoisomerase IB (poxvirus type). | 0.402 |
KKY_3147 | KKY_3148 | KKY_3147 | KKY_3148 | mRNA 3-end processing factor. | ATP-dependent DNA ligase LigC. | 0.996 |
KKY_3147 | KKY_375 | KKY_3147 | KKY_375 | mRNA 3-end processing factor. | Helicase domain protein. | 0.820 |
KKY_3147 | KKY_376 | KKY_3147 | KKY_376 | mRNA 3-end processing factor. | Hypothetical protein. | 0.815 |
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