STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAGlycogen synthase 1; Synthesizes alpha-1,4-glucan chains using ADP-glucose (480 aa)    
Predicted Functional Partners:
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family
 
 0.999
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily
 
 0.999
pgm
Phosphoglucomutase; This enzyme participates in both the breakdown and synthesis of glucose. Required for the synthesis of capsular polysaccharide and normal lipopolysaccharide
 
 0.989
glgP
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
 
  
 0.986
EHH03724.1
COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases
 
  
 0.984
ppdK
Pyruvate, phosphate dikinase; COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family
  
  
 0.695
EHH05708.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1
   
 
 0.657
EHH04735.1
COG0067 Glutamate synthase domain 1
   
 
 0.657
nodN
Nodulation protein N; COG2030 Acyl dehydratase
       0.462
EHH03722.1
COG4427 Uncharacterized protein conserved in bacteria
       0.451
Your Current Organism:
Agrobacterium tumefaciens CCNWGS0286
NCBI taxonomy Id: 1082932
Other names: A. tumefaciens CCNWGS0286, Agrobacterium tumefaciens CCNWGS0286, Agrobacterium tumefaciens str. CCNWGS0286, Agrobacterium tumefaciens strain CCNWGS0286
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