STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO88296.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (705 aa)    
Predicted Functional Partners:
SDO88272.1
Peptide/nickel transport system permease protein.
 
 0.994
SDO88241.1
Peptide/nickel transport system permease protein.
 
 0.960
SDO84635.1
Peptide/nickel transport system permease protein.
 
 0.959
SDO86565.1
Peptide/nickel transport system permease protein.
 
 0.953
SDO24946.1
Peptide/nickel transport system permease protein.
 
 0.948
SDO88212.1
Peptide/nickel transport system substrate-binding protein.
 
 0.922
SDP44844.1
Peptide/nickel transport system permease protein.
 
 0.922
SDP26100.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.918
SDP26312.1
Peptide/nickel transport system permease protein.
 
 0.901
SDO28372.1
Peptide/nickel transport system permease protein.
 
 0.894
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.