STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0019PFAM: Protein of unknown function DUF86; KEGG: txy:Thexy_1916 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Tsac_0020
PFAM: Nucleotidyltransferase; KEGG: txy:Thexy_1917 DNA polymerase beta domain protein region.
 
     0.908
Tsac_0369
PFAM: Nucleotidyltransferase; KEGG: txy:Thexy_2253 DNA polymerase beta domain protein region.
 
 
 
 0.730
Tsac_2309
KEGG: txy:Thexy_0966 hypothetical protein.
   
 
 0.676
Tsac_0018
KEGG: txy:Thexy_1915 metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain.
       0.551
Tsac_0056
PFAM: PilT protein, N-terminal; KEGG: txy:Thexy_1953 twitching motility protein PilT.
 
     0.510
Tsac_0365
PFAM: Nucleotidyltransferase; KEGG: txy:Thexy_2249 DNA polymerase beta domain protein region.
 
     0.493
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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