Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB33787.1 | ABB33788.1 | Syncc9605_0005 | Syncc9605_0006 | DNA gyrase/topoisomerase IV, subunit A. | Hypothetical protein. | 0.654 |
ABB33787.1 | ABB33790.1 | Syncc9605_0005 | Syncc9605_0008 | DNA gyrase/topoisomerase IV, subunit A. | Conserved hypothetical protein. | 0.442 |
ABB33787.1 | ABB33791.1 | Syncc9605_0005 | Syncc9605_0009 | DNA gyrase/topoisomerase IV, subunit A. | Conserved hypothetical protein. | 0.405 |
ABB33787.1 | ABB33792.1 | Syncc9605_0005 | Syncc9605_0010 | DNA gyrase/topoisomerase IV, subunit A. | NusB family protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.661 |
ABB33787.1 | ftsY | Syncc9605_0005 | Syncc9605_0011 | DNA gyrase/topoisomerase IV, subunit A. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.472 |
ABB33787.1 | queG | Syncc9605_0005 | Syncc9605_0007 | DNA gyrase/topoisomerase IV, subunit A. | 4Fe-4S cluster binding; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. | 0.623 |
ABB33788.1 | ABB33787.1 | Syncc9605_0006 | Syncc9605_0005 | Hypothetical protein. | DNA gyrase/topoisomerase IV, subunit A. | 0.654 |
ABB33788.1 | ABB33790.1 | Syncc9605_0006 | Syncc9605_0008 | Hypothetical protein. | Conserved hypothetical protein. | 0.530 |
ABB33788.1 | ABB33791.1 | Syncc9605_0006 | Syncc9605_0009 | Hypothetical protein. | Conserved hypothetical protein. | 0.466 |
ABB33788.1 | ABB33792.1 | Syncc9605_0006 | Syncc9605_0010 | Hypothetical protein. | NusB family protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.466 |
ABB33788.1 | ABB33794.1 | Syncc9605_0006 | Syncc9605_0012 | Hypothetical protein. | Serine phosphatase. | 0.522 |
ABB33788.1 | ftsY | Syncc9605_0006 | Syncc9605_0011 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.462 |
ABB33788.1 | queG | Syncc9605_0006 | Syncc9605_0007 | Hypothetical protein. | 4Fe-4S cluster binding; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. | 0.744 |
ABB33790.1 | ABB33787.1 | Syncc9605_0008 | Syncc9605_0005 | Conserved hypothetical protein. | DNA gyrase/topoisomerase IV, subunit A. | 0.442 |
ABB33790.1 | ABB33788.1 | Syncc9605_0008 | Syncc9605_0006 | Conserved hypothetical protein. | Hypothetical protein. | 0.530 |
ABB33790.1 | ABB33791.1 | Syncc9605_0008 | Syncc9605_0009 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.613 |
ABB33790.1 | ABB33792.1 | Syncc9605_0008 | Syncc9605_0010 | Conserved hypothetical protein. | NusB family protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.613 |
ABB33790.1 | ABB33794.1 | Syncc9605_0008 | Syncc9605_0012 | Conserved hypothetical protein. | Serine phosphatase. | 0.524 |
ABB33790.1 | ftsY | Syncc9605_0008 | Syncc9605_0011 | Conserved hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.613 |
ABB33790.1 | queG | Syncc9605_0008 | Syncc9605_0007 | Conserved hypothetical protein. | 4Fe-4S cluster binding; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. | 0.564 |
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