Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABB33988.1 | ABB35068.1 | Syncc9605_0212 | Syncc9605_1314 | NUDIX hydrolase. | RNA binding S1; Belongs to the RNR ribonuclease family. | 0.736 |
| ABB33988.1 | ABB35090.1 | Syncc9605_0212 | Syncc9605_1336 | NUDIX hydrolase. | Probable ribonuclease II. | 0.736 |
| ABB33988.1 | deaD | Syncc9605_0212 | Syncc9605_1648 | NUDIX hydrolase. | DEAD/DEAH box helicase-like; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.920 |
| ABB33988.1 | rph | Syncc9605_0212 | Syncc9605_0270 | NUDIX hydrolase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.773 |
| ABB34003.1 | rph | Syncc9605_0227 | Syncc9605_0270 | Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.941 |
| ABB34183.1 | ABB35068.1 | Syncc9605_0407 | Syncc9605_1314 | 3'-5' exonuclease. | RNA binding S1; Belongs to the RNR ribonuclease family. | 0.773 |
| ABB34183.1 | ABB35090.1 | Syncc9605_0407 | Syncc9605_1336 | 3'-5' exonuclease. | Probable ribonuclease II. | 0.773 |
| ABB34183.1 | ABB36054.1 | Syncc9605_0407 | Syncc9605_2322 | 3'-5' exonuclease. | ATP-dependent helicase HrpB. | 0.918 |
| ABB34183.1 | deaD | Syncc9605_0407 | Syncc9605_1648 | 3'-5' exonuclease. | DEAD/DEAH box helicase-like; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.771 |
| ABB34183.1 | rph | Syncc9605_0407 | Syncc9605_0270 | 3'-5' exonuclease. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.985 |
| ABB34183.1 | rpsD | Syncc9605_0407 | Syncc9605_0787 | 3'-5' exonuclease. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.918 |
| ABB34183.1 | rpsK | Syncc9605_0407 | Syncc9605_0354 | 3'-5' exonuclease. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.912 |
| ABB34519.1 | rph | Syncc9605_0750 | Syncc9605_0270 | Ham1 protein-like. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.890 |
| ABB35068.1 | ABB33988.1 | Syncc9605_1314 | Syncc9605_0212 | RNA binding S1; Belongs to the RNR ribonuclease family. | NUDIX hydrolase. | 0.736 |
| ABB35068.1 | ABB34183.1 | Syncc9605_1314 | Syncc9605_0407 | RNA binding S1; Belongs to the RNR ribonuclease family. | 3'-5' exonuclease. | 0.773 |
| ABB35068.1 | ABB35090.1 | Syncc9605_1314 | Syncc9605_1336 | RNA binding S1; Belongs to the RNR ribonuclease family. | Probable ribonuclease II. | 0.642 |
| ABB35068.1 | deaD | Syncc9605_1314 | Syncc9605_1648 | RNA binding S1; Belongs to the RNR ribonuclease family. | DEAD/DEAH box helicase-like; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.426 |
| ABB35068.1 | rph | Syncc9605_1314 | Syncc9605_0270 | RNA binding S1; Belongs to the RNR ribonuclease family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.911 |
| ABB35090.1 | ABB33988.1 | Syncc9605_1336 | Syncc9605_0212 | Probable ribonuclease II. | NUDIX hydrolase. | 0.736 |
| ABB35090.1 | ABB34183.1 | Syncc9605_1336 | Syncc9605_0407 | Probable ribonuclease II. | 3'-5' exonuclease. | 0.773 |
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