STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pc16g10890Pc16g10890 protein. (809 aa)    
Predicted Functional Partners:
Pc13g08850
Pc13g08850 protein.
   
 0.991
utp25
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 0.991
Pc18g00830
Pc18g00830 protein; Belongs to the DEAD box helicase family.
   
 0.991
Pc14g00640
Pc14g00640 protein.
   
 
 0.989
Pc16g09000
Pc16g09000 protein.
   
 0.989
Pc14g00830
Pc14g00830 protein.
   
 
 0.988
Pc15g00270
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.987
Pc21g11160
Pc21g11160 protein.
 
 
 0.987
Pc22g08340
Pc22g08340 protein.
   
 0.987
Pc13g04450
Pc13g04450 protein.
   
  0.985
Your Current Organism:
Penicillium rubens
NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255
Server load: low (24%) [HD]