STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01444Uncharacterized protein. (779 aa)    
Predicted Functional Partners:
PIIN_05356
G-patch domain-containing protein.
    
 0.870
PIIN_03835
Probable PRP43-involved in spliceosome disassembly.
    
 0.861
PIIN_06585
Uncharacterized protein.
    
  0.758
PIIN_01618
Probable splicing factor PRP8 (U5 snRNP).
    
   0.747
PIIN_01741
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.691
PIIN_01813
Probable CDC40-Pre-mRNA splicing factor important for catalytic step II.
     
 0.677
PIIN_00079
Pinin_SDK_memA domain-containing protein.
  
 
  0.665
PIIN_06399
Probable ATP dependent RNA helicase.
    
   0.655
PIIN_04590
Probable MTR4-involved in nucleocytoplasmic transport of mRNA.
   
 
 0.651
PIIN_05959
Related to step II splicing factor SLU7.
   
  0.651
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.