STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02500Uncharacterized protein. (257 aa)    
Predicted Functional Partners:
PIIN_03034
Uncharacterized protein.
   
   0.799
PIIN_02173
Related to REX4-strong similarity to X.laevis XPMC2 protein.
   
   0.778
PIIN_04590
Probable MTR4-involved in nucleocytoplasmic transport of mRNA.
   
 
 0.772
PIIN_07306
Related to TRF4-topoisomerase I-related protein.
   
 
 0.749
PIIN_05179
Uncharacterized protein.
   
   0.637
PIIN_02378
Probable YEF3-translation elongation factor eEF3.
    
   0.564
PIIN_00984
Related to NOP6-protein with possible role in rRNA processing.
   
 
 0.560
PIIN_07761
Probable IMP3-component of the U3 small nucleolar ribonucleoprotein.
   
 
 0.560
PIIN_04564
Uncharacterized protein.
   
   0.557
PIIN_04907
RRM domain-containing protein.
   
 
 0.542
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.