STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02685Related to 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. (253 aa)    
Predicted Functional Partners:
PIIN_04530
Succinate-semialdehyde dehydrogenase.
   
 
 0.627
PIIN_02328
Related to TAP42, component of the Tor signaling pathway.
    
 0.600
PIIN_05736
Probable COX15-cytochrome oxidase assembly factor.
    
 0.572
PIIN_07388
Probable nik-1 protein (Os-1p protein).
 
   
 0.560
PIIN_08601
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.547
PIIN_06194
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
     
 0.546
PIIN_03396
Probable branching enzyme (Be1).
   
 
  0.541
PIIN_02643
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.503
PIIN_02915
Related to regulator Ustilago maydis 1 protein (Rum1).
    
 
 0.503
PIIN_05532
Uncharacterized protein.
    
 
 0.452
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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