STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07233Probable Shwachman-Bodian-Diamond syndrome protein. (253 aa)    
Predicted Functional Partners:
PIIN_06465
Related to translation elongation factor 2-putative.
  
 
 0.973
PIIN_00044
C2H2-type domain-containing protein.
   
 
 0.870
PIIN_03494
Related to mitochondrial ribosomal protein L2 of the large subunit.
 
 
 
 0.856
PIIN_04268
Probable RPS19B-ribosomal protein S19.e, cytosolic.
   
 
 0.831
PIIN_08083
Probable RPL5-60S large subunit ribosomal protein L5.e.
   
 
 0.806
PIIN_09508
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.797
PIIN_08877
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.795
PIIN_02221
Probable ribosomal protein L24.e.A, cytosolic.
   
 
 0.793
PIIN_03435
Probable RPS17B-ribosomal protein S17.e.B.
   
 
 0.792
PIIN_04534
Probable 60S large subunit ribosomal protein L6.
   
 
 0.790
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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