STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08780Rab-GAP TBC domain-containing protein. (1361 aa)    
Predicted Functional Partners:
PIIN_00068
Probable ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.780
PIIN_05309
Probable DED1-ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 
  0.708
PIIN_10263
Related to YPT31-GTP-binding protein of the rab family.
   
 
 0.546
PIIN_05558
Probable GTP-binding protein Rab11.
   
 
 0.536
PIIN_00915
Probable ras-related GTP-binding protein.
   
 
  0.497
PIIN_01854
Related to small G-protein Ras1.
   
 
  0.497
PIIN_01855
Related to small G-protein Ras1.
   
 
  0.497
PIIN_02722
Related to RAS-2 RAS-2 PROTEIN.
   
 
  0.497
PIIN_11779
Related to SIN3 protein-binding protein STB2.
   
 
  0.497
PIIN_07782
Uncharacterized protein.
   
 
  0.497
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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