STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virFTranscriptional regulator, AraC family. (294 aa)    
Predicted Functional Partners:
pchR
Transcriptional regulator, arac family.
  
     0.769
pchR-3
AraC family transcriptional regulator.
  
     0.747
pbuA
TonB-dependent siderophore receptor.
 
   
 0.674
ybfI
AraC family transcriptional regulator.
  
     0.656
TMO_1890
Oxidoreductase, zinc-binding dehydrogenase family.
       0.543
TMO_1893
Hypothetical protein.
 
     0.526
yeaM-3
AraC family transcriptional regulator.
 
   0.487
rhaS
Transcriptional regulator, AraC family.
  
     0.482
besA
Putative esterase.
 
    0.461
yqhC
Transcriptional regulator protein.
  
     0.428
Your Current Organism:
Tistrella mobilis
NCBI taxonomy Id: 1110502
Other names: T. mobilis KA081020-065, Tistrella mobilis KA081020-065, Tistrella mobilis str. KA081020-065, Tistrella mobilis strain KA081020-065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.